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HHV8 Example Sequences



>gi|61743574|gb|AY953903.1| Human herpesvirus 8 clone HKS60 K1 glycoprotein gene, partial cds
ACACGTTGACCTGTCTGTCTGATGCATCCTTGCCAATATCCTGGTATTGCAACGATACTCGGCTTTTGCG
ACTTTCGGACCCATCATTCACTGTTGCCACCATTACCTGCAATTTTACTTGTGTGGAACAATCTGGGCAT
CGACAGAGCATTTGGATTACATGGAATGCACAACCTGTCTTACAAACCTTGTGTGCACAGCCATCAAACA
CAGTCACTTGTGGTCAGCATGTTACTTTGTATTGTTCTACCTCTGGAAATAATGTTACCGTTTGGCATCT
ACCAAACGGACGAAATGAAACCGTGTCACAAACTAAATACTATAATTTTACGCTGATGAACCAAACTGAG
GGGTGTTATACTTGTTCTAACGGGCTGTCGTCTCGCCTGTCAAATCGTATATGTTTTTGGGCGCGTTGTG
CCAATATAACTCCAGAAACTCATACTGTATCTGTCAGCAGTACTACAGGCTTTAGAACAGTCAGTACTCA
TAGCTTAGTGAACATAATCCATGCAACCACACATGATGTAGTTGTAGTGAAAGAAGCAAAATCTACAAAT
CCACATATTGAAGTGCCTTTTCTTGTATTTATGACACTCGTAGCTCTGATAG
>gi|61743572|gb|AY953902.1| Human herpesvirus 8 clone HKS59 K1 glycoprotein gene, partial cds
ACACGTTGACCTGTCCGTCTAACAGATCCTTGCCAATATCCTGGTATTGCAACGGGACTCGGCTTCACCG
AATAACGGCGTCTAACCTAACTGTTTCTTCGCTCACCTGCAATTTTACTTGTATGACAACATCTGGGCCT
ACACACAGCATTTGGATTGAATGGTATACACAACCTGTCTTACAAACCTTGTGTGCACAGCCATCAAACA
CAGTGTCTTGTGGTCAGCCTGTTACTTTGTATTGTGATACCTCTTCAAATAATGTTACCATTTGGCGTCT
ACAAAACGGACACAATCAAACCGTGTCACAAACTAAATACTATAATTTTACGATGATGAACCAAACTCAG
GGGTGTTATACTTGTTCTAACGGGCTGTCGTCTCGCCTGTCAAATCGTATATGTTTTTGGGCGTCTTGTA
TCAATATAACTCCAGAAACTCCTACTGTCTCCGCCAGCAGTACTATGGCCGTTAAAGTATTAAGAACTAA
TGGATTACTGAAAATAATCCCTGCAACCACACATGCTGCAGTTGCAGTGGAAGAAGTAAAATCTACAAAT
ACACATATTCAAGTGCCTTTTCTTGTATTTATGACGCTCGTAGCTCTGATAG
>gi|61743570|gb|AY953901.1| Human herpesvirus 8 clone HKS58 K1 glycoprotein gene, partial cds
ACACGTTGACCTGTCTGTCCGATGCATCCTTGCCAATATCCTGGTATTGCAACGATACTCGGCTTCGGCG
ACTGACGAACCAATCATTCACTGTTGCCACCATTACCTGCAATTTTACTTGTGTGGAACAATCTGGGCAT
CGACAGAGCATTTGGATTACATGGAATGCACAACCTGTCTTACAAACCTTGTGTGCACAGCCATCAAACA
CAGTCACTTGTGGTCAGCATGTTACTTTGTATTGTTCTACCTCTGGAAATAATGTTACCGTTTGGCATCT
ACCAAACGGACGAAATGAAACCGTGTCACAAACTAAATACTATAATTTTACGCTGATGAACCAAACTGAG
GGGTGTTATACTTGTTCTAACGGGCTGTCGTCTCGCCTGTCAAATCGTATATGTTTTTGGGCGCGTTGTG
CCAATATAACTCCAGAAACTCATACTGTATCTGTCAGCAGTACTACAGGCTTTAGAACATTCAGTACTAA
TAGCTTAGTGAACATAATCCATGCAACCACACATGATGTAGTTGTAGTGAAAGAAGCAAAATCTACAAAT
CCACATATTGAAGTGCCTTTTCTTGTATTTATGACACTCGTAGCTCTGATAG
>gi|61743568|gb|AY953900.1| Human herpesvirus 8 clone HKS56 K1 glycoprotein gene, partial cds
ACACGTTGACCTGTCTGTCTGATGCATCCTTGCCAATATCCTGGTATTGCAACGATACTCGAATTTGGCG
ACTGAAGGACCAATCATTCACTGTTGTCACCATTACCTGCAATTTTACTTGTGTGGAACAATCTGGGCAT
CGACAGAGCATTTGGATTACATGGAATGCACAACCTGTCTTACAAACCTTGTGTACACAGCCATCAAACA
CAGTCACTTGTGGTCAGCATGTTACTTTGTATTGTTCTACCTCTGGAAATAATGTTACCGTTTGGCATCT
ACCAAACGGACGAAATGAAACCGTGTCACAAACTAAATACTATAATTTTACGCTGATGAACCAAACTGAG
GGGTGTTATACTTGTTCTAACGGGCTGTCGTCTCGCCTGTCAAATCGTATATGTTTTTGGGCGCGTTGTG
CCAATATAACTCCAGAAACTCATACTGTATCTGTCAGCAGTACTACAGGCTTTAGAACATTCAGTACTAA
TAGCTTAGTGAACATGATCCATGCAACCACACATGATGTAGTTGTAGTGAAAGAAGCAAAATCTACAAAT
CCACATATTGAAGTGCCTTTTCTTGTATTTATGACACTCGTAGCTCTGATAG
>gi|61743566|gb|AY953899.1| Human herpesvirus 8 clone HKS54 K1 glycoprotein gene, partial cds
ACACGTTGACCTGTCCGTCTGATGCATCCTTGCCAACATCCTGGTATTGCAATGATACTCGGCTTTTCCG
ACTGAAGCTGCAAATAGTAACTGTTGTCAACCTTACCTGCAATTTTAGTTGTGTGGGACAATCTGGGCAT
CGACACAGCGTTTGGATTACATGGTATGAACAACCTGTCTTACAAACCTTGTGTGGACAACCATCAAACA
CAGTCACTTGTGGTCAGCATGTTACTTTGTATTGTTCTACCTCTGGAAATAATGTTACCGTTTGGCATCT
ACCAAACGGACAAAATGAAACTGTGTCACAAACTAAATACTATAATTTTACGCTGATGAACCAAACTGAG
GGGTGTTATGCTTGTTCTAACGGGCTGTCGTCTCGCCTGTCAAATCGTCTATGTTTTTGGGCGCGTTGTG
CCAATATAACTCCAGAAACTCATACTGTATCTGTCAGCAGTACTACAGGCTTTAGAACATTCAGTACTAA
TAGCCATGCAACCACACATGATGTAGTTGTAGTGCAAGAAGCAAAATCTACAAATCCACATATTGAAGTG
CCTTTTCTTGCATTTATCACACTCGTAGCTCTGATAG
>gi|61743564|gb|AY953898.1| Human herpesvirus 8 clone HKS52 K1 glycoprotein gene, partial cds
ACACGTTGACCTGTCTGTCTGATGCATCCTTGCCAATATCCTGGTATTGCAACGATACTCGGCTTTTGCG
ACTGACGAACCAATCATTCACTGTTGCCACCTTTACCTGCAATTTTACTTGTGTGGAACAATCTGGGCAT
CGACAGAGCATTTGGATTACATGGAATGCACAACCTGTCTTACAAACCTTGTGTGCACAGCCAGCAAACA
CAGTCACTTGTGGTCAGCATGTTACTTTGTATTGTTCTACCTCTGGAAATAATGTTACCGTTTGGCATCT
ACCAAACGGACGAAATGAAACCGTGTCACAAACTAAATACTATAATTTTACGCTGATGAACCAAACTGAG
GGGTGTTATACTTGTTCTAACGGGCTGTCGTCTCGCCTGTCAAATCGTATATGTTTTTGGGCGCGTTGTG
CCAATATAACTCCAGAAACTCATACTGTATCTGTCAGCAGTACTACAGGCTTTAGAACATTCAGTACTAA
TAGCTTAGTGAACATAATCCATGCAACCACACATGATGTAGTGAAAGAAGCAAAATCTACAAATCCACAT
ATTGAAGTGCCTTTTCTTGTATTTATGACACTCGTAGCTCTGATAG
>gi|61743562|gb|AY953897.1| Human herpesvirus 8 clone HKS50 K1 glycoprotein gene, partial cds
ACACGTTGACCTGTCTGTCTGATGCATCCTTGCCAATATCCTGGTATTGCAACGATACTCGGCTTTGGCG
ACTGACGGACCAATCATTCACTGTTGCCACCATTACCTGCAATTTTACTTGTGTGGAACAATCTGGGCAT
CGACAGAGCATTTGGATTACATGGAATGCACAACCTGTCTTACAAACCTTGTGTGCACAGCCATCAAACA
CAGTCGCTTGTGGTCAGCAGGTTACTTTGTATTGTTCTACCTCTGGAAATAATGTTACCGTTTGGCATCT
ACCAAACGGACGAAATGAAACCGTGTCACAAACTAAATACTATAATTTTACGCTGATGAACCAAACTGAG
GGGTGTTATACTTGTTCTAACGGGCTGTCGTCTCGCCTGTCAAATCGTATATGTTTTTGGGCGCGTTGTG
CCAATATAACTCCAGAAACTCATACTGTATCTGTCAGCAGTACTACAGGCTTTAGAACATTCAGTACTAA
TAGCTTAGTGAACATAATCCATGCAACCACACATGATGTAGTTGTAGTGAAAGAAGCAAAATCTACAAAT
CCACATATTGAAGTGCCTTTTCTTGTATTTATGACACTCGTAGCTCTGATAG




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HHV8 Subtyping Process
HHV8 Example Sequences
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Developed by: Taryn Page, Sharon Cassol, Andrew Rambaut and Tulio de Oliveira

Developed in cooperation with the Evolutionary Biology Group at University of Oxford, UK, HIV-1 Pathogenesis and Immunotherapeutics Program at University of Pretoria, South Africa.


Funded by the Marie Curie Fellowship,  Wellcome Trust and the Royal Society, UK.

Suggestions or problems on the program please contact:  Dr Tulio de Oliveira.