BioAfrica - LASP HTLV-1 Decision Tree

LASP HTLV-1 Decision Tree

RULES:

Rule 1: HTLV-1 subtype and subgroup.
Subtype assigned based on sequence located in the LTR clustering inside a HTLV1 subtype and subgroup with bootstrap > 75%.

Rule 2: check the report.
Subtype unassigned based on sequence located in the LTR clustering outside a HTLV1 subtype and subgroup with bootstrap > 75%.

Rule 3: check the report.
Subtype unassigned based on sequence located in the LTR do not clustering with HTLV1 subtype with bootstrap > 75%.

Rule 4: genomic region not supported.
HTLV1 genomic region not supported for subtyping analysis identified with BLAST score > 200.

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How to cite

HTLV Tutorials

HTLV Decision Trees

HTLV Subtyping Process

HTLV Example Sequences

Developed by: Luiz Carlos J Alcantara, Sonia Van Dooren, Anne-Mieke Vandamme, Bernardo Galvao-Castro, Tulio de Oliveira.

Developed in cooperation with the Evolutionary Biology Group at University of Oxford, UK, the REGA Institute at the Katholieke Universiteit Leuven, Belgium and the Laboratorio Avancado de Saude Publica (LASP) CPqGM/FIOCRUZ, Brazil.

Funded by the Marie Curie Fellowship, Flanders Bilateral Cooperation Program, PN-DST/AIDS (Ministry of Health) and FAPESB, Brazil.

For HTLV-1 subtyping questions please contact Dr Luiz Alcantara,
Suggestions or problems on the program please contact: Dr Tulio de Oliveira.