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LASP HTLV-1 Example Sequences

>HTLV24_DQ005565_
CGGGGGCTTAGAGCCTCCCAGTGAAAAACATTTCCGCGAAACAGAAGTCTGAAAAGGTCA
GGGCCCAGACTAAGGCTCTGACGTCTCCCCCCCGGAGGGACAGCTCAGCACCGGCTCAGG
CTAGGCCCTGACGTGTCCCCCTGAAGACAAATCATAAGCTCAGACCTCCGGGAAGCCACC
GGAACCACCCATTTCCTCCCCATGTTTGTCAAGCCGCCCTCAGGCGTTGACGACAACCCC
TCACCTCAAAAAACTTTTCATGGCACGCATATGGCTGAATAAACTAACAGGAGTCTATAA
AAGCGTGGAGACAGTTCAGGAGGGGGCTCGCATCTTTCCTTCACGCGCCCGCCGCCCTAC
CTGAGGCCGCCATCCACGCCGGTTGAGTCGCGTTCTGCCGCCTCCCGCCTGTGGTGCCTC
CTGAACTGCGTCCGCCGTCTAGGTAAGTTTAGAGCTCAGGTCGAGACCGGGCCTTTGTCC
GGCGCTCCCTTGGAGCCTACCTAGACTCAGCCGGCTCTCCACGCTTTGCCTGACCCTGCT
TGCCCAACTCTGCGTCTTTGTTTCGTTTTCTGTTCTGCGCCGCTACAGATCGAAAGTTCC
ACCCCTTTCCCTTTCATTCACGACTGACTGCCGGCTTGGCCCACGGCCAAGTACCGGCGA
CTCCGTTGGCTCGGAGCCAGCGACAGCCCATTCTATAGCACTCTCCAGGAGAGAAATTT
>Ni3_Y16497_
CGGGGGCTTAGAGCCTCCCAGTGAAAAACATTTCCGAGAAACAGAAGTCTGAAAAGGTCA
GGGCCCAGACTAAGGCTCTGACGTCTCCCCCCGGAGGGACAGCTCAGCACCGGCTCGGGC
TAGGCCCTGACGTGTCCCCCTGAAGACAAATCATAAGCTCAGACCTCCGGGAAGCCACCG
GGAACCACCCATTTCCTCCCCATGTTTGTCAAGCCGTCCTCAGGCGTTGACGACAACCCC
TCACCTCAAAAAACTTTTCATGGCACGCATATGGCTCAATAAACTAACAGGAGTCTATAA
AAGCGTGGAGACAGTTCAGGAGGGGGCTCGCATCTCTCCTTCACGCGCCCGCCGCCCTAC
CTGAGGCCGCCATCCACGCCGGTTGAGTCGCGTTCTGCCGCCTCCCGCCTGTGGTGCCTC
CTGAACTGCGTCCGCCGTCTAGGTAAGTTTAAAGCTCAGGTCGAGACCGGGCCTTTGTCC
GGCGCTCCCTTGGAGCCTACCTAGACTCAGCCGGCTCTCCACGCTTTGCCTGACCCTGCT
TGCTCAACTCTACGTCTTTGTTTCGTTTTCTGTTCTGCGCCGTTACAGATCGAAAGTTCC
ACCCCTTTCCCTTTCATTCACGACTGACTGCCGGCTTGGCCCACGGCCAAGTACCGGCGA
CTCCGTTGGCTCGGAGCCAGCGACAGCCCATCCTATAGCACTCTCCAGGAGAGAAATTT
>IDUSSA_DQ005555_
TGACAATGACCACGAGCCCCAAATATCCCCCGGGGGCTTAGAGCCTCCCAGTGAAAAACA
TTTCCGCGAAACAGAAGTCTGAAAAGGTCAGGGCCCAGACTAAGGCTCTGACGTCTCCCC
CCGGAGGGACAGCTCAGCACCGGCTCAGGCTAGGCCCTGACGTGTCCCCCTGAAGACAAA
TCATAAGCTCAGACCTCCGGGAAGCCACCGGAACCACCCATTTCCTCCCCATGTTTGTCA
AGCCGCCCTCAGGCGTTGACGACAACCCCTCACCTCAAAAAACTTTTCATGGCACGCATA
TGGCTGAATAAACTAACAGGAGTCTATAAAAGCGTGGAGACAGTTCAGGAGGGGGCTCGC
ATCTCTCCTTCACGCGCCCGCCGCCCTACCTGAGGCCGCCATCCACGCCGGTTGAGTCGC
GTTCTGCCGCCTCCCGCCTGTGGTGCCTCCTGAACTGCGTCCGCCGTCTAGGTAAGTTCA
GAGCTCAGGTCGAGACCGGGCCTTTGTCCGGCGCTCCCTTGGAGCCTGCCTAGACTCAGC
CGGCTCTCCACGCTTTGCCTGACCCTGCTTGCTCAACTCTGCGTCTTTGTTTCGTTTTCT
GTTCTGCGCCGCTACAGATCGAAAGTTCCACCCCTTTCCCTTTCATTCACGACTAACTGC
CGGCTTGGCCCACGGCCAAGTGCCGGCGACTCCGTTGGCTCGGAGCCAGCGACAGCCCAT
TCTATAGCACTCTCCAGGAGAGAAACGTAGTACACAG
>BCI1-2_U32552_
GGGAGTTAGAGCCTCCCAGTGAAAAACATTTCCGCGAAACAGAAGTCTGAAAAGGTCAG
GGCCCAGACTAAGGCTCTGACGTCTCCCCCCGGAGGGACAGCTCAGCACCGGCTCAGGCT
AGGCCCTGACGTGTCCCCCTGAAGACAAATCATAAGCTCAGACCTCCGGGAAGCCACCGG
AACCACCCATTTCCTCCCCATGTTTGTCGAGCCGCCCTCAGGCGTTGACGACAACCCCTC
ACCTCAAAAAACTTTTCATGGCACGCATATGGCTGAATAAACTAACAGGAGTCTATAAAA
GCGTGGAGACAGTTCAGGAGGGGGCTCGCATCTCTCCTTCACGCGCCCGCCGCCCTACCT
GAGGCCGCCATCCACGCCGGTTGAGTCGCGTTCTGCCGCCTCCCGCCTGTGGTGCCTCCT
GAACTGCGTCCGCCGTCTAGGTAAGTTTAGAGCTCAGGTCGAGACCGGGCCTTTGTCCGG
CGCTCCCTTGGAGCCTACCTAGACTCAGCCGGCTCTCCACGCTTTGCCTGACCCTGCTTG
CTCAACTCTGCGTCTTTGTTTCGTTTTCTGTTCTGCGCCGCTACAGATCGAAAGTTCCAC
CCCTTTCCCTTTCATTCACGACTGACTGCCGGCTTGGCCCACGGCCAAGTACCGGCGACT
CCGTTGGCTCGGAGCCAGCGACAGCCCATTCTAG



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Developed by: Luiz Carlos J Alcantara,  Sonia Van Dooren, Anne-Mieke Vandamme, Bernardo Galvao-Castro, Tulio de Oliveira.

Developed in cooperation with the Evolutionary Biology Group at University of Oxford, UK, the REGA Institute at the Katholieke Universiteit Leuven, Belgium and the Laboratorio Avancado de Saude Publica (LASP) CPqGM/FIOCRUZ, Brazil.

Funded by the Marie Curie Fellowship, Flanders Bilateral Cooperation Program, PN-DST/AIDS (Ministry of Health) and FAPESB, Brazil.

For HTLV-1 subtyping questions please contact Dr Luiz Alcantara,
Suggestions or problems on the program please contact:  Dr Tulio de Oliveira.