How to Cite the REGA HIV-1 Automated Subtyping Tool

The REGA HIV-1 subtyping tool version 3 is open for public use.

In the moment please cite the usage of REGA HIV-1 subtyping tool V3 as:

Automated subtyping of HIV-1 genetic sequences for clinical and surveillance purposes: Performance evaluation of the new REGA version 3 and seven other tools

Peña ACP, Faria NR, Imbrechts S, Libin P, Abecasis AB, Deforche K, Gomez A, Camacho RJ, de Oliveira T, Vandamme A-M.

Infectious Genetics and Evolution 2013; 19:337-48. doi: 10.1016/j.meegid.2013.04.032



To cite V2 and the others subtyping and genotyping tools (e.g. HCV, HBV, HPV, HTLV-1 and HHV8) please use the reference:

A Standardized Framework for Accurate, High-throughput Genotyping of Recombinant and Non-recombinant Viral Sequences .

Alcantara LCJ, Cassol S, Libin P, Deforche K, Pybus OG, Van Ranst M, Galvao-Castro B, Vandamme A-M and de Oliveira T.

Nucleic Acids Research 2009; doi: 10.1093/nar/gkp455, pages 1-9.



The original REGA HIV-1 subtyping tool V1 paper:

An Automated Genotyping System for Analysis of HIV-1 and other Microbial Sequences.

de Oliveira T,Deforche K, Cassol S, Salminem M, Paraskevis D, Seebregts C, Snoeck J, van Rensburg EJ,Wensing AMJ, van de Vijver DA, Boucher CA, Camacho R and Vandamme A-M.

Bioinformatics 2005; 21 (19), 3797-3800.

Rega Subtyping tool have been cited over 200 times .

You can also see papers that cite Rega HIV-1 subtyping tool in google scholar.