Example Sequences for the REGA HIV Subtyping Tool

>gi33300549
CCTCAAATCACTCTTTGGCAACGACCCCTAGTCACAATACAAGTAGGGGGACAGCTAAGGGAAGCTCTAT TAGATACAGGAGCAGATGATACAGTATTAGAAGACATAAATTTGCCAGGAAAATGGAAACCAAAAATGAT AGGGGGAATTGGAGGTTTTATCAAAGTAAAACAGTATGATAACATATGCATAGACATTTGTGGACACAAG GCTATAGGTACAGTGTTGGTAGGACCTACACCTGCCAACATAATTGGAAGAAATATGTTGACTCAGATTG GTTGTACTTTAAATTTTCCGATTAGTCCTATTGAAACTGTACCAGTAAAATTGAAGCCAGGAATGGATGG CCCAAAGGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAATATGTACAGAAATG GAAAAAGAAGGAAAAATTTCAAGAATTGGGCCTGAAAATCCATATAATACTCCAGTATTTGCCATAAAGA AAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGATTTTTG GGAGGTCCAATTAGGAATACCGCATCCTGCAGGGTTAAAAAAGAAAAAGTCAGTAACAGTACTGGATGTG GGGGATGCATATTTTTCAGTTCCCTTAGATAAGGACTTCAGGAAGTACACTGCATTCACCATACCTAGTC TCAACAATGAGACACCAGGAATTAGGTACCAGTACAATGTGCTTCCACAAGGATGGAAAGGATCACCAGC AATATTCCAATGTAGCATGACAAAAATCTTAGATCCTTTTAGAGCAAAAAATCCAGACATAGTTATCTAC CAATACGTGGATGATTTGTATGTAGGGTCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAGT TAAGAGAACATCTACTGAAATGGGGATTTTTTACACCAGACAAAAAACATCAAAAGGAGCCCCCATTCCT TTGGATGGGGTATGAACTCCATCCTGATAAATGGGCAGTGCAG
>gi333005683
CCTCAAATCACTCTTTGGCAACGACCCCTAGTCACAATACAAGTAGGGGGACAGCTAAGGGAAGCTCTAT TAGATACAGGAGCAGATGATACAGTATTAGAAGACATAAATTTGCCAGGAAAATGGAAACCAAAAATGAT AGGGGGAATTGGAGGTTTTATCAAAGTAAAACAGTATGATAACATATGCATAGACATTTGTGGACACAAG GCTATAGGTACAGTGTTGGTAGGACCTACACCTGCCAACATAATTGGAAGAAATATGTTGACTCAGATTG GTTGTACTTTAAATTTTCCGATTAGTCCTATTGAAACTGTACCAGTAAAATTGAAGCCAGGAATGGATGG CCCAAAGGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAATATGTACAGAAATG GARAAAGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGA AAAAAGAAAGTTCTAGTTCTAAATGGAGAAAGGTAGTAGATTTCAGAGAACTTAATAAAAGAACTCAAGA CTTCTGTGAAGTCCAATTAGGAATACCACATCCTGCAGGATTAAAAAAGAACAAATCAGTAACARTACTR GATGTGGGTGATGCATATTTTTCAATTCCCTTAGATGAAGACTTCAGGAAGTATACTGCATTTACCATAC CTAGTATAAACAATGAGAAACCAGGGATTAGATATCAGTACAATGTGCTYCCACAGGGATGGAAAGGATC ACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTATAGAAAACAAAATCCAGACATAGTT ATCTGTCAATACATGGATGATTTGTATGTAGCATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAG AGGAACTGAGACAACATTTGTGGAAGTGGGGATTCTACACACCAGACAAAAAATATCAGAAAGAACCCCC
ATTCCTTTGGATG
>gi|20136660|gb|AF493411.1
CCTCAGATCACTCTTTGGCAGCGACCCTTCGTTACAATAAAAATAGGGGGACAACTAATAGAAGCCCTAT TAGATACAGGAGCAGATGATACAGTATTAGAAGACATAGATTTGCCAGGAAGATGGAAACCAAAAATAAT AGGAGGAGTTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGGTACCTGTAGAAATCTGCGGACATAAA GTTATAACTACAGTATTAGTAGGAGCTACACCTGTCAACATAATTGGAAGAAATCTGATGACTAAGATTG GCTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGG CCCAAAAGTCAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAATAGAAATTTGTACAGAATTG GARAAAGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGA AAAAAGAAAGTTCTAGTTCTAAATGGAGAAAGGTAGTAGATTTCAGAGAACTTAATAAAAGAACTCAAGA CTTCTGTGAAGTCCAATTAGGAATACCACATCCTGCAGGATTAAAAAAGAACAAATCAGTAACARTACTR GATGTGGGTGATGCATATTTTTCAATTCCCTTAGATGAAGACTTCAGGAAGTATACTGCATTTACCATAC CTAGTATAAACAATGAGAAACCAGGGATTAGATATCAGTACAATGTGCTYCCACAGGGATGGAAAGGATC ACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTATAGAAAACAAAATCCAGACATAGTT ATCTGTCAATACATGGATGATTTGTATGTAGCATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAG AGGAACTGAGACAACATTTGTGGAAGTGGGGATTCTACACACCAGACAAAAAATATCAGAAAGAACCCCC
ATTCCTTTGGATG
>HMDR4
CCCATTAGTCCTATTGAAACTGTACCAGTAAAATTGAAGCCAGGAATGGATGGCCCAAAAGTTAAACAAT GGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAATTGGAAGAGGCAGGAAAAAT TTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAGGAAAAAGAATAGTACTAAA TGGAGAAAAATAGTAGATTTCAGAGAACTTAATAAGAAAACTCAAGACTTTTGGGAAGTTCAATTAGGAA TTCCACATCCCGGAGGGTTAAAAAAGAAAAARTCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTC AATTCCCTTAGATAAAGACTTCAGGAAGTATACTGCCTTTACCATACCTAGTATAAACAATGAGACACCA GGGATTAGATATCAGTACAATGTGCTCCCACAGGGATGGAAAGGATCACCAGCAATATTCCCAAGCTGCA TGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACGTGGATGATTT GTATGTAGGATCTGACTTAGAAATAGAGCAGCATAGAACAAAAATAGAGGAACTAAGACAATATCTATGG AAATGGGGATTTTACACACCAGAGAACAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAAC
TCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTACCAGAAAAAGA
>CRF02_AG.FR.DJ263
AAATTGGGCCTGAAAATCCATACAATACTCCAGTGTTTGGCATAAAGAAGAGAGATAGTACTAAATGGAG AAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTCCTGGGAGGTCCAATTAGGAATACCT CATCCCGCGGGATTAAAAAAGAAAAAATCAGTAACAGTACTAGATGTGGGTGATGCATATTTTTCAGTCC CCTTAGATAAAGACTTTAGAAAGTATACTGCATTCACTATACCTAGTACAAATAATGAGACACCAGGGAT TAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTTCAGGCAAGCATGACA AACATCTTAGAGCACTATAGAATAAAAAATCCAGAGATAATGATCTACCAATATATGGATGATTTATATG TAGGATCTGACTTAGAGATAGAGCAGCATAGAGCAAAAATAGAGGAGTTGAGAGAACATCTACTAAAATG GGGATTTACCACACCAGATAAAAAACATCAGAAAGAACCTCCATTTCTTTGGATGGGATATGAACTCCAT CCTGACAAATGGACAGTCCAGCCTATACAGCTGCCAGAAAAAGACAGCTGGACTGTCAATGATATACAGA AATTAGTGGGAAAACTAAATTGGGCAAGTCAGATTTATGCAGGAATTAAAGTAAAGCAACTGTGTAAACT CCTCAGGGGAGCCAAAGCATTAACAGATATAGTACCACTGACTGAGGAAGCAGAATTAGAATTGGCAGAG AACAGGGAAATTCTAAAAGAACCTGTACATGGAGTATATTATGACCCAGCAAAAGACCTAATAGCAGAAA TACAGAAACAAGGGCAAGACCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTAAAAACAGG AAAATATGCAAAAAGGAGGTCTGCCCACACTAATGATGTAAAACAATTAGCAGAGGTAGTGCAAAAAGTG GTTACAGAAAGCATAGTAATATGGGGAAAGACCCCTAAATTTAGACTACCCATACAAAGAGAAACATGGG AAGCATGGTGGATGGAGTATTGGCAGGCTACCTGGATTCCTGACTGGGAGTTCGTCAATACCCCTCCTCT AGTAAAATTGTGGTACCAGTTAGAGAAAGACCCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCA GCTAATAGGGAGACTAAGCTAGGAAAAGCGGGGTATGTCACTGACAGAGGAAGACAAAGGTTGTTTCCCT AACTGAGACAACAAATCAAAAGACTGAGTTACATGCAATTTATCTAGCCTTGCAGGACTCAGGATCAGAA GTAAATATAGTAACAGACTCACAGTATGCATTAGGAATCATTCAGGCACAACCAGACAGGAGTGAATCAG AGTTAGTCAATCAAATAATAGAGAAGCTAATAGAAAAGGACAAAGTCTACCTGTCATGGGTACCAGCACA CAAAGGGATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTAATGGAATCAGGAAGGTACTATTTTTA GATGGCATAGATAAAGCCCAAGAAGAGCATGGAAGATATCACAGCAATTGGAGAGCAATGGCTAGTGATT TTAATCTGCCACCTATAATAGCAAAAGAAATAGTGGCCTGCTGTGATCAATGTCAGCTGAAAGGGGAAGC CATGCATGGACAAGTAGACTGTGGTCCAGGAATATGGCAATTAGATTGTACACATTTAGAAGGAAAAATT ATCCTGGTAGCAGTCCATGTAGCCAGTGGTTATATAGAAGCAGAAGTTATCCCAGCAGAAACAGGACAGG AGACAGCATACTTTATACTAAAATTAGCAGGAAGATGGCCAGTGAAAGTAATACACACAGACAATGGCAG CAATTTTACCAGTGCTGCAGTAAAGGCAGCATGTTGGTGGGCAAATGTCACACAGGAATTTGGAATTCCC TACAATCCCCAAAGCCAAGGAGTAGTGGAAGCTATGAATAAAGAATTAAAGAAAATCATAGGGCAGGTCA GGGATCAAGCTGAACACCTTAAGACAGCAGTACAGATGGCAGTATTCATTCACAATTTTAAAAGAAAAGG GGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGCATCAGATATACAAACTAAAGAA CTACAAAAACAGATTACAAAAATTCAAAATTTTCGGGTCTATTACAGGGACAGCAGAGACCCCATTTGGA AAGGACCAGCAAAACTACTCTGGAAAGGTGAAGGGGCAGTAGTAATACAGGACAAGAGTGATATAAAGGT AGTACCAAGAAGAAAAGCAAAAATCATTAAAGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCA
GGTAGACAGGATGAGGA
This application is built and maintained by Tulio de Oliveira, Pieter Libin, Koen Deforche, Sharon Cassol and Anne-Mieke Vandamme.