Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

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REGA HIV-1 Subtyping Tool - Version 2.0

This tool is designed to use phylogenetic methods in order to identify the subtype of a specific sequence.  The sequence is analysed for recombination using bootscanning methods. More information on the subtyping process.
Note for batch analysis: The REGA subtype tool accepts up to 1000 sequences at a time.
Choose a mirror to subtype your sequences.

Enter here your input data as FASTA format. Or click here for importing a sample sequence.

Sequences
 

FASTA Input

Paste FASTA format sequence in the text box below.
RESET
ANALYZE

Developed by: Tulio de Oliveira, Koen Deforche, Sharon Cassol, Andrew Rambaut and Anne-Mieke Vandamme.

Developed in cooperation with the Evolutionary group at University of Oxford, UK., the HIV-1 Pathogenesis and Immunotherapeutics Program at University of Pretoria, South Africa, and the REGA institute at the Katholieke Universiteit Leuven, Leuven, Belgium. Funded by the Flanders Bilateral Cooperation Program and the Wellcome Trust (grant # 061238 ). 

Please report problems and/or suggestions to  Dr. Tulio de Oliveira

Revised 3rd of October 2006

The Team

The Data